PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 457aa    MW: 48218.7 Da    PI: 9.9878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759068genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-055981123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  676759068 59 FVCEICNKGFQRDQNLQLHRRGH 81
               89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.81E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121717.1E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355250100130IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.81E-7130155No hitNo description
SMARTSM00355190135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQLQKSAGK KKRNLPGMPD PDSEVIALSP KTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQK SSKEVRKKVY VCPEITCVHH DPSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKKYAVVSDW KAHSKICGTK EYKCDCGTLF SRRDSFITHR  180
AFCDALAEES ARNHSKKQNP EVLTRKKPVP DPNSLPTSPN HSAPSSAAPV ETHSAITKSP  240
PAITVKRSES PKTPPEILQE APKPTAGLNV TRNGVFAGLF ESSSASPSIY ASSSSSCSQS  300
LFAPSSSIEP ISLGLSTSHG SSFLCSTRFP AQPAMSATAL LQRAAQMGAA SSGGSLLRGL  360
GIVSSSSPSM DSIVPHGLAL GLPCGGESSS GLKELMMGNS SVFGPKQTTL DFLGLGRAVG  420
NGGGGPGNGL SALVGRSRSI DVAATFGSGE FSGKDIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLRQKSSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697426.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A078GDB00.0A0A078GDB0_BRANA; BnaC05g34640D protein
STRINGBra036098.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2